Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE0564Conserved hypothetical protein. (319 aa)    
Predicted Functional Partners:
PAE1246
Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations.
  
  
 0.974
PAE1247
Transport and binding proteins; Cations.
  
  
 0.968
rps14
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.755
PAE2022
Conserved (helix-turn-helix protein, copG family); Regulatory functions; General.
       0.652
PAE0566
Hypothetical; Conserved within genome.
       0.641
PAE0731
Transcriptional regulatory protein, conjectural; Regulatory functions; General.
  
  
 0.636
PAE2309
Ferric uptake regulator, putative; Regulatory functions; General.
  
  
 0.590
PAE0567
Conserved hypothetical protein.
       0.535
PAE0636
Conserved hypothetical protein.
       0.499
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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