STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE0797Short chain dehydrogenase; Unclassified. (260 aa)    
Predicted Functional Partners:
PAE2832
Short chain dehydrogenase; Unclassified.
  
  
 
0.919
PAE2089
Short chain dehydrogenase family; Unclassified.
  
  
 
0.915
PAE1861
Hypothetical protein with 4 ankyrin repeats; Unclassified.
  
 0.805
PAE0796
Hypothetical protein.
       0.749
PAE2904
Exonuclease sbcD, conjectural; DNA metabolism; DNA replication, recombination, and repair.
  
 
 0.707
PAE0692
Hypothetical protein with partial (eukaryotic) protein kinase domain; Unclassified.
  
 0.676
PAE0815
Serine/threonine protein kinase, putative; Regulatory functions; General.
  
 0.676
paudg
Uracil DNA glycosylase (Pa-UDGa); Removes uracil bases that are present in DNA as a result of either deamination of cytosine or misincorporation of dUMP instead of dTMP. Can remove uracil from double-stranded DNA containing either a U/G or U/A base pair as well as from single-stranded DNA. Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family.
       0.650
PAE1350
Cytochrome b/b6; Energy metabolism; Electron transport.
  
 
 0.620
PAE2926
NADH-ubiquinone oxidoreductase subunit; Energy metabolism; Electron transport.
   
 
 0.571
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.