Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1155Conserved hypothetical protein. (135 aa)    
Predicted Functional Partners:
PAE1153
Conserved hypothetical protein.
 
 
   0.924
PAE1156
Conserved hypothetical protein.
       0.773
PAE1310
Conserved hypothetical protein.
  
     0.714
PAE1894
Conserved hypothetical protein.
  
     0.692
PAE2550
Conserved hypothetical protein.
  
     0.599
PAE0168
Conserved hypothetical protein.
  
     0.561
PAE0165
Conserved hypothetical protein.
 
     0.469
PAE0210
Conserved hypothetical protein.
  
     0.447
PAE1171
Conserved hypothetical protein.
  
     0.425
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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