Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1199ABC transporter ATP-binding protein, putative; Transport and binding proteins; Unknown substrate. (228 aa)    
Predicted Functional Partners:
PAE3619
Nitrate ABC transport, ATP-binding protein, putative; Transport and binding proteins; Anions.
  
     0.723
PAE1878
ATP binding protein, degenerate; Transport and binding proteins; Unknown substrate.
  
 0.665
PAE2301
ABC transporter ATP-binding component, degenerate; Transport and binding proteins; Unknown substrate.
  
 0.665
PAE0360
ABC transporter, ATP-binding protein; Transport and binding proteins; Cations.
 
     0.659
PAE0270
Transport and binding proteins; Unknown substrate.
 
  
 0.620
PAE3571
ABC transporter ATP-binding protein, putative; Transport and binding proteins; Anions.
  
     0.619
PAE2532
Ribose ABC transporter, ATP-binding protein, putative; Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
    0.549
PAE0316
ABC-2 type transport system, membrane protein; Transport and binding proteins; Unknown substrate.
  
  
 0.527
PAE3065
ABC-2 type transport system, membrane protein; Transport and binding proteins; Unknown substrate.
  
  
 0.502
PAE1197
Hypothetical protein.
       0.501
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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