Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1278Trehalose synthase; Cellular processes; Adaptations to atypical conditions. (401 aa)    
Predicted Functional Partners:
PAE1277
Conserved hypothetical protein.
 
     0.977
PAE1272
Trehalose-6-phosphate synthase; Cellular processes; Adaptations to atypical conditions.
  
 0.947
PAE3429
Glycogen synthase (starch (bacterial glycogen) synthase), putative; Energy metabolism; Biosynthesis and degradation of polysaccharides.
    
 0.915
PAE3422
Conserved hypothetical protein.
  
 
 0.615
PAE1273
Glycosyl transferase, conjectural; Unclassified.
 
   
 0.541
PAE2544
Conserved hypothetical protein.
  
 0.503
PAE1275
Hypothetical; Conserved within genome.
     
 0.473
PAE1735
Conserved hypothetical protein.
   
 0.430
PAE2004
Serine/threonine specific protein phosphatase; Regulatory functions; General.
   
 
 0.429
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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