STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE1284Glycolate oxidase subunit glcE; Central intermediary metabolism; Other. (327 aa)    
Predicted Functional Partners:
PAE1282
Glycolate oxidase subunit glcF; Central intermediary metabolism; Other.
 
 
 0.990
PAE1286
Glycolate oxidase subunit glcD; Central intermediary metabolism; Other.
 
  
 
0.984
PAE1287
Malate synthase (glcB); Central intermediary metabolism; Other.
  
 
 0.970
PAE1038
D-3-phosphoglycerate dehydrogenase (serA); Amino acid biosynthesis; Serine family; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.934
PAE3495
Conserved hypothetical protein; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
 0.909
PAE3068
Phosphoglycolate phosphatase (pgp), conjectural; Energy metabolism; Sugars.
    
 0.908
PAE1872
Isocitrate lyase; Central intermediary metabolism; Other.
    
 0.906
fni
Conserved protein (possible oxidoreductase); Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.731
PAE0721
Electron transfer flavoprotein alpha subunit (etfA); Energy metabolism; Electron transport.
  
 
 0.701
PAE3587
Electron transfer flavoprotein alpha subunit (etfA); Energy metabolism; Electron transport.
  
 
 0.701
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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