Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
PAE1298Dipeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines. (354 aa)    
Predicted Functional Partners:
PAE1297
Transport and binding proteins; Amino acids, peptides and amines.
 
 0.997
PAE1299
Dipeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines.
 
 0.993
PAE1296
Transport and binding proteins; Amino acids, peptides and amines.
 
 0.991
PAE1300
Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.979
PAE3317
Oligopeptide transport ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
 
 0.968
PAE2393
Dipeptide transport permease; Transport and binding proteins; Amino acids, peptides and amines.
 
 0.966
PAE3087
Oligopeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.962
PAE2391
Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.957
PAE3316
Oligopeptide transport ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
 
 0.948
PAE1295
Conserved hypothetical protein.
       0.719
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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