STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE1625Conserved hypothetical protein. (235 aa)    
Predicted Functional Partners:
PAE0284
Conserved hypothetical protein.
  
     0.640
PAE1624
Conserved hypothetical protein.
       0.589
PAE1446
Conserved hypothetical protein.
  
     0.563
endA
tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
 
     0.555
PAE2935
Conserved hypothetical protein.
  
     0.537
PAE3088
Oligopeptide binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
  
     0.529
PAE0705
Conserved hypothetical protein.
  
     0.516
PAE2941
Conserved hypothetical protein.
  
     0.513
PAE2180
DNA-directed DNA polymerase (B1); DNA metabolism; DNA replication, recombination, and repair.
  
     0.508
PAE3469
Transcriptional regulatory protein, AsnC family, putative; Regulatory functions; General.
 
     0.470
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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