Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1636Conserved hypothetical protein. (329 aa)    
Predicted Functional Partners:
PAE1634
Hypothetical protein.
 
     0.930
PAE1635
Conserved hypothetical protein.
 
     0.929
PAE3547
Heat shock protein, htpX homolog, conjectural; Cellular processes; Adaptations to atypical conditions.
 
     0.605
PAE1349
Rieske iron sulfur protein (parR); Energy metabolism; Electron transport.
  
     0.589
PAE2406
Hypothetical protein.
  
     0.579
PAE1451
Hypothetical protein.
 
     0.576
PAE2839
Molybdopterin oxidoreductase, molybdopterin binding subunit part 2, authentic frameshift; Energy metabolism; Electron transport.
  
     0.572
PAE1638
Conserved hypothetical protein.
       0.569
PAE2280
Conserved hypothetical protein.
  
     0.552
PAE3644
Hypothetical protein.
  
     0.551
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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