Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1883Conserved hypothetical protein. (234 aa)    
Predicted Functional Partners:
PAE0492
paREP15, putative coiled-coil protein.
  
     0.623
PAE0920
paREP15, putative coiled-coil protein.
  
     0.613
PAE0906
paREP7; Hypothetical; Conserved within genome.
  
     0.581
PAE0506
paREP15, putative coiled-coil protein.
  
     0.518
PAE0481
paREP15, putative coiled-coil protein.
  
     0.486
PAE0443
Conserved protein; Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
  
     0.466
PAE1884
Phosphate permease, conjectural; Transport and binding proteins; Anions.
       0.453
PAE0442
Glycosyltransferase (type 1); Cell envelope; Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
  
     0.450
PAE0210
Conserved hypothetical protein.
  
     0.441
PAE1902
Conserved hypothetical protein.
  
     0.422
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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