Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAE1935Carbon monoxide dehydrogenase large subunit, conjectural; Energy metabolism; Other. (723 aa)    
Predicted Functional Partners:
PAE1936
Carbon monoxide dehydrogenase small subunit, conjectural; Energy metabolism; Other.
 
 0.999
PAE1939
Carbon monoxide dehydrogenase medium subunit, conjectural; Energy metabolism; Other.
 
 
 0.998
PAE2477
Molybdopterin binding oxidoreductase small and medium subunit; Energy metabolism; Electron transport.
 
 0.995
PAE1934
Conserved protein; Energy metabolism; Other.
 
   
 0.917
PAE2669
Conserved hypothetical protein.
 
  
 0.776
PAE0727
Molybdenum cofactor biosynthesis protein D/E; Biosynthesis of cofactors, prosthetic groups, and carriers; Molybdopterin.
     
 0.709
PAE1941
Chorismate mutase, conjectural; Amino acid biosynthesis; Aromatic amino acid family.
       0.704
PAE1943
paREP5; Hypothetical; Conserved within genome.
       0.513
PAE1944
Hypothetical protein.
       0.427
PAE1946
Hypothetical protein.
       0.427
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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