STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE1948P. aerophilum family 453, possible regulatory protein; Regulatory functions; General. (223 aa)    
Predicted Functional Partners:
PAE1944
Hypothetical protein.
       0.791
PAE1946
Hypothetical protein.
       0.791
PAE1943
paREP5; Hypothetical; Conserved within genome.
       0.628
PAE1949
paREP11.
       0.590
PAE1941
Chorismate mutase, conjectural; Amino acid biosynthesis; Aromatic amino acid family.
       0.478
PAE1954
Hypothetical protein.
       0.441
PAE1955
Hypothetical protein.
       0.441
PAE1934
Conserved protein; Energy metabolism; Other.
       0.427
PAE1935
Carbon monoxide dehydrogenase large subunit, conjectural; Energy metabolism; Other.
       0.427
PAE1936
Carbon monoxide dehydrogenase small subunit, conjectural; Energy metabolism; Other.
       0.427
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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