Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE1958Hypothetical; Conserved within genome. (169 aa)    
Predicted Functional Partners:
PAE1451
Hypothetical protein.
  
     0.619
PAE1956
Hypothetical protein.
       0.564
PAE1957
Hypothetical protein.
       0.556
PAE1702
Conserved hypothetical protein.
  
     0.527
PAE1954
Hypothetical protein.
       0.500
PAE1955
Hypothetical protein.
       0.500
PAE1951
Conserved hypothetical protein.
       0.481
PAE3215
Conserved hypothetical protein.
  
     0.462
PAE1536
Conserved protein (possible dual specificity phosphatase); Unclassified.
  
     0.450
rps27e
Protein synthesis; Ribosomal proteins: synthesis and modification.
  
     0.412
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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