Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE2038Hypothetical protein. (310 aa)    
Predicted Functional Partners:
PAE2037
Hypothetical protein.
       0.792
PAE2039
moxR related protein; Regulatory functions; General.
  
  
 0.754
guaA
GMP synthetase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
       0.660
PAE2041
Hypothetical protein.
  
  
 0.652
PAE2946
Hypothetical protein.
  
    0.506
PAE2040
Hypothetical protein.
       0.470
PAE2901
Conserved hypothetical protein.
  
  
 0.460
PAE0090
Conserved hypothetical protein.
  
  
 0.438
PAE2240
Conserved hypothetical protein.
  
  
 0.438
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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