Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE2255Conserved hypothetical protein. (289 aa)    
Predicted Functional Partners:
PAE2256
Hypothetical protein.
       0.715
PAE1638
Conserved hypothetical protein.
  
     0.680
PAE1234
Conserved hypothetical protein.
       0.652
PAE1702
Conserved hypothetical protein.
       0.649
PAE1653
Conserved hypothetical protein.
  
     0.617
PAE0707
Conserved hypothetical protein.
 
     0.614
PAE2254
Hypothetical protein.
       0.582
PAE2050
Conserved hypothetical protein.
  
     0.538
PAE0678
Conserved hypothetical protein.
  
     0.537
PAE1635
Conserved hypothetical protein.
 
     0.524
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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