Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAE2319Hypothetical protein. (508 aa)    
Predicted Functional Partners:
PAE2317
alanyl-tRNA synthetase related protein; Protein synthesis; tRNA aminoacylation.
       0.793
PAE2316
Threonine dehydratase (ilvA); Amino acid biosynthesis; Pyruvate family.
       0.717
PAE2315
Unclassified.
       0.695
guaA
GMP synthetase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.663
PAE2421
Potassium transport peripheral protein, conjectural; Transport and binding proteins; Cations.
     
 0.426
PAE2309
Ferric uptake regulator, putative; Regulatory functions; General.
     
 0.411
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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