Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE2402Hypothetical protein. (112 aa)    
Predicted Functional Partners:
PAE2400
Hypothetical protein.
       0.788
PAE2398
Hypothetical protein.
       0.681
PAE2399
Type II secretion system protein, conjectural; Protein fate; Protein and peptide secretion and trafficking.
       0.681
PAE2396
Hypothetical protein.
       0.676
PAE2397
Hypothetical protein.
       0.676
PAE2403
Hypothetical protein.
       0.665
PAE2394
Hypothetical protein.
       0.661
PAE2405
Hypothetical protein.
       0.527
PAE2406
Hypothetical protein.
       0.410
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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