Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE2412Hypothetical protein. (1032 aa)    
Predicted Functional Partners:
PAE2414
Hypothetical protein.
       0.792
PAE2408
Hypothetical protein.
       0.699
PAE2409
Hypothetical protein.
       0.699
PAE2410
Hypothetical protein.
       0.699
PAE2407
Hypothetical protein.
       0.668
PAE2406
Hypothetical protein.
       0.553
PAE2416
Hypothetical protein.
       0.495
PAE2417
Hypothetical protein.
       0.495
PAE2405
Hypothetical protein.
       0.447
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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