STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE2445Ornithine cyclodeaminase (arcB); Energy metabolism; Amino acids and amines. (289 aa)    
Predicted Functional Partners:
PAE2446
DNA metabolism; DNA replication, recombination, and repair.
       0.793
PAE2447
Conserved hypothetical protein.
       0.793
PAE2442
Hypothetical protein.
       0.726
PAE1051
Cysteine synthase; Amino acid biosynthesis; Serine family.
  
  
 0.632
PAE2260
Agmatinase (speB); Central intermediary metabolism; Polyamine biosynthesis; Belongs to the arginase family.
 
  
 0.616
PAE2316
Threonine dehydratase (ilvA); Amino acid biosynthesis; Pyruvate family.
  
  
 0.527
PAE2310
Proline dehydrogenase; Amino acid biosynthesis; Serine family.
 
  
 0.509
PAE1917
Pyrroline-5-carboxylate reductase; Amino acid biosynthesis; Glutamate family.
  
  
 0.483
PAE2439
Hypothetical; Conserved within genome.
       0.479
dapAL
Dihydrodipicolinate synthase; Amino acid biosynthesis; Aspartate family; Belongs to the DapA family.
     
 0.477
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.