Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
PAE0564 | PAE0731 | Conserved hypothetical protein. | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | 0.719 |
PAE0564 | PAE1246 | Conserved hypothetical protein. | Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations. | 0.990 |
PAE0564 | PAE2758 | Conserved hypothetical protein. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.608 |
PAE0727 | PAE1888 | Molybdenum cofactor biosynthesis protein D/E; Biosynthesis of cofactors, prosthetic groups, and carriers; Molybdopterin. | Multicopper oxidase; Unclassified. | 0.648 |
PAE0727 | PAE2758 | Molybdenum cofactor biosynthesis protein D/E; Biosynthesis of cofactors, prosthetic groups, and carriers; Molybdopterin. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.594 |
PAE0731 | PAE0564 | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | Conserved hypothetical protein. | 0.719 |
PAE0731 | PAE1246 | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations. | 0.717 |
PAE0731 | PAE2715 | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | Transport and binding proteins; Cations. | 0.426 |
PAE0731 | PAE2758 | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.594 |
PAE1246 | PAE0564 | Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations. | Conserved hypothetical protein. | 0.990 |
PAE1246 | PAE0731 | Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations. | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | 0.717 |
PAE1246 | PAE2758 | Manganese ABC transporter ATP-binding protein; Transport and binding proteins; Cations. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.610 |
PAE1888 | PAE0727 | Multicopper oxidase; Unclassified. | Molybdenum cofactor biosynthesis protein D/E; Biosynthesis of cofactors, prosthetic groups, and carriers; Molybdopterin. | 0.648 |
PAE1888 | PAE2374 | Multicopper oxidase; Unclassified. | Hypothetical protein. | 0.414 |
PAE1888 | PAE2715 | Multicopper oxidase; Unclassified. | Transport and binding proteins; Cations. | 0.539 |
PAE1888 | PAE2746 | Multicopper oxidase; Unclassified. | Protein synthesis; Ribosomal proteins: synthesis and modification. | 0.493 |
PAE1888 | PAE2758 | Multicopper oxidase; Unclassified. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.763 |
PAE2374 | PAE1888 | Hypothetical protein. | Multicopper oxidase; Unclassified. | 0.414 |
PAE2374 | PAE2758 | Hypothetical protein. | Cation-transporting ATPase (P-type); Transport and binding proteins; Cations. | 0.685 |
PAE2715 | PAE0731 | Transport and binding proteins; Cations. | Transcriptional regulatory protein, conjectural; Regulatory functions; General. | 0.426 |
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