PAE2891 protein (Pyrobaculum aerophilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAE2891

Transport and binding proteins; Amino acids, peptides and amines. (243 aa)

Predicted Functional Partners:

PAE2893

0.999

PAE0953

0.998

PAE2890

0.985

PAE0063

0.557

PAE2889

0.554

PAE3208

0.464

PAE2260

0.422

PAE1363

0.421

folE

0.405

Your Current Organism:

Pyrobaculum aerophilum

NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAE0063	PAE0953	PAE0063	PAE0953	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	0.464
PAE0063	PAE2890	PAE0063	PAE2890	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	Transport and binding proteins; Amino acids, peptides and amines.	0.445
PAE0063	PAE2891	PAE0063	PAE2891	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	Transport and binding proteins; Amino acids, peptides and amines.	0.557
PAE0063	PAE2893	PAE0063	PAE2893	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	Transport and binding proteins; Amino acids, peptides and amines.	0.548
PAE0953	PAE0063	PAE0953	PAE0063	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	0.464
PAE0953	PAE2260	PAE0953	PAE2260	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Agmatinase (speB); Central intermediary metabolism; Polyamine biosynthesis; Belongs to the arginase family.	0.506
PAE0953	PAE2890	PAE0953	PAE2890	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Transport and binding proteins; Amino acids, peptides and amines.	0.893
PAE0953	PAE2891	PAE0953	PAE2891	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Transport and binding proteins; Amino acids, peptides and amines.	0.998
PAE0953	PAE2893	PAE0953	PAE2893	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Transport and binding proteins; Amino acids, peptides and amines.	0.999
PAE0953	PAE3208	PAE0953	PAE3208	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	Helix-turn-helix protein; Unclassified.	0.548
PAE1363	PAE2891	PAE1363	PAE2891	Branched-chain amino acid ABC transporter, ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.	Transport and binding proteins; Amino acids, peptides and amines.	0.421
PAE1363	PAE2893	PAE1363	PAE2893	Branched-chain amino acid ABC transporter, ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.	Transport and binding proteins; Amino acids, peptides and amines.	0.400
PAE2260	PAE0953	PAE2260	PAE0953	Agmatinase (speB); Central intermediary metabolism; Polyamine biosynthesis; Belongs to the arginase family.	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	0.506
PAE2260	PAE2891	PAE2260	PAE2891	Agmatinase (speB); Central intermediary metabolism; Polyamine biosynthesis; Belongs to the arginase family.	Transport and binding proteins; Amino acids, peptides and amines.	0.422
PAE2260	PAE2893	PAE2260	PAE2893	Agmatinase (speB); Central intermediary metabolism; Polyamine biosynthesis; Belongs to the arginase family.	Transport and binding proteins; Amino acids, peptides and amines.	0.420
PAE2889	PAE2890	PAE2889	PAE2890	Conserved hypothetical protein.	Transport and binding proteins; Amino acids, peptides and amines.	0.554
PAE2889	PAE2891	PAE2889	PAE2891	Conserved hypothetical protein.	Transport and binding proteins; Amino acids, peptides and amines.	0.554
PAE2889	PAE2893	PAE2889	PAE2893	Conserved hypothetical protein.	Transport and binding proteins; Amino acids, peptides and amines.	0.554
PAE2890	PAE0063	PAE2890	PAE0063	Transport and binding proteins; Amino acids, peptides and amines.	Transporter ATP-binding protein, putative; Transport and binding proteins; Anions.	0.445
PAE2890	PAE0953	PAE2890	PAE0953	Transport and binding proteins; Amino acids, peptides and amines.	Putrescine/spermidine binding protein, conjectural; Transport and binding proteins; Amino acids, peptides and amines.	0.893