Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE2971Hypothetical protein. (129 aa)    
Predicted Functional Partners:
PAE2968
Sugar-phosphate nucleotidyl transferase, putative; Energy metabolism; Biosynthesis and degradation of polysaccharides.
       0.704
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.704
PAE2970
Conserved hypothetical protein.
       0.704
PAE2964
Hypothetical protein.
       0.506
PAE2965
Hypothetical protein.
       0.506
PAE2967
Hypothetical protein.
       0.506
PAE2966
Hypothetical protein.
       0.504
PAE2960
Conserved hypothetical protein.
       0.470
PAE2961
Conserved protein with 2 CBS domains; Unclassified.
       0.470
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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