Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAE3065ABC-2 type transport system, membrane protein; Transport and binding proteins; Unknown substrate. (253 aa)    
Predicted Functional Partners:
PAE3066
ABC-2 type transport system ATP-binding protein; Transport and binding proteins; Unknown substrate.
  
  
 0.954
PAE3064
ABC-2 type transport system, membrane protein; Transport and binding proteins; Unknown substrate.
       0.844
PAE2273
Reductase, putative; Energy metabolism; Electron transport.
  
  
 0.663
PAE2336
Conserved hypothetical protein.
  
  
 0.663
PAE0269
ABC-2 type transport system ATP-binding protein; Transport and binding proteins; Unknown substrate.
  
  
 0.502
PAE0315
ABC-2 type transport system ATP-binding protein; Transport and binding proteins; Unknown substrate.
  
  
 0.502
PAE1168
ABC transporter ATP-binding protein, putative; Transport and binding proteins; Anions.
  
  
 0.502
PAE1199
ABC transporter ATP-binding protein, putative; Transport and binding proteins; Unknown substrate.
  
  
 0.502
PAE3619
Nitrate ABC transport, ATP-binding protein, putative; Transport and binding proteins; Anions.
  
  
 0.487
PAE0294
P. aerophilum family 322 protein.
  
  
 0.425
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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