STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE3087Oligopeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines. (356 aa)    
Predicted Functional Partners:
PAE3086
Oligopeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines.
  
 0.988
PAE3317
Oligopeptide transport ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.940
PAE1298
Dipeptide ABC transporter, permease protein; Transport and binding proteins; Amino acids, peptides and amines.
 
  
 0.923
PAE2392
Dipeptide transport permease; Transport and binding proteins; Amino acids, peptides and amines.
 
  
 0.921
PAE1297
Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.908
PAE3088
Oligopeptide binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
 
     0.847
PAE2391
Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.837
PAE3316
Oligopeptide transport ATP-binding protein, putative; Transport and binding proteins; Amino acids, peptides and amines.
 
  
 0.828
PAE1300
Transport and binding proteins; Amino acids, peptides and amines.
 
 
 0.794
rps13
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
  
    0.731
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.