STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAE3198ATP-dependant helicase, probable; Unclassified. (1275 aa)    
Predicted Functional Partners:
PAE3197
Hypothetical protein.
       0.773
PAE3199
U/G & T/G mismatch specific glycosylase (Pa-MIG); DNA glycosylase that excises thymine from T/G mismatches and uracil from U/G mismatches. Can also process T/GO and U/GO, but not A/G, T/C and U/C. Has weak AP lyase activity.
 
     0.564
PAE1113
Possible DNA-directed DNA polymerase (B2); DNA metabolism; DNA replication, recombination, and repair.
  
 
   0.433
PAE2109
DNA-directed DNA polymerase (B3); DNA metabolism; DNA replication, recombination, and repair.
  
 
   0.425
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.