Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PAE3412Ribose ABC transporter, permease protein; Transport and binding proteins; Carbohydrates, organic alcohols, and acids. (320 aa)    
Predicted Functional Partners:
PAE3411
Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
 
 0.997
PAE3414
Conserved hypothetical protein.
 
 
 0.996
PAE3413
Ribose ABC transport system ATP-binding protein; Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
 
 0.995
PAE3118
Ribose ABC transporter, permease protein; Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
 
 0.988
PAE3120
Ribose ABC transport system ATP-binding; Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
 
 0.983
PAE3121
Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
 
 
 0.960
PAE3119
Ribose ABC transporter, permease protein; Transport and binding proteins; Carbohydrates, organic alcohols, and acids.
  
  
 
0.928
ppcA
Conserved hypothetical protein; Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. Belongs to the PEPCase type 2 family.
       0.482
PAE3418
Conserved hypothetical protein.
       0.425
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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