Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE3615Hypothetical protein. (273 aa)    
Predicted Functional Partners:
PAE3611
Nitrate reductase alpha subunit (narG); Energy metabolism; Electron transport.
       0.792
PAE3612
Nitrate reductase beta subunit (narH); Energy metabolism; Electron transport.
       0.792
PAE3613
Nitrate reductase subunit, conjectural; Energy metabolism; Electron transport.
       0.792
PAE3614
Hypothetical protein; Energy metabolism; Electron transport.
       0.792
PAE3617
Conserved hypothetical protein.
       0.655
PAE3610
Nitrate reductase delta subunit (narJ); Energy metabolism; Electron transport.
       0.554
PAE3609
Hypothetical protein.
       0.453
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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