Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE3657Transport and binding proteins; Unknown substrate. (477 aa)    
Predicted Functional Partners:
PAE0062
Molybdenum transport system permease protein, putative; Transport and binding proteins; Anions.
 
  
 0.904
PAE0329
Conserved hypothetical protein.
 
  
 0.768
PAE3656
acetyl-CoA C-acyltransferase; Fatty acid and phospholipid metabolism; Degradation.
       0.678
PAE0055
Hypothetical protein.
 
     0.629
PAE0712
Surface layer-associated STABLE protease, conjectural; Protein fate; Degradation of proteins, peptides, and glycopeptides; Belongs to the peptidase S8 family.
 
     0.612
PAE0017
Conserved hypothetical protein.
  
     0.513
PAE3655
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Amino acid biosynthesis; Aspartate family.
     
 0.493
PAE3580
Conserved hypothetical protein.
  
     0.492
PAE1173
Conserved hypothetical protein.
  
     0.475
PAE3169
Conserved protein with 7 CBS domains; Unclassified.
  
     0.472
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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