Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PAE3678Carbonic anhydrase part 1, authentic frameshift; Central intermediary metabolism; Other. (114 aa)    
Predicted Functional Partners:
PAE2071
Phosphoribosyl transferase; Unclassified.
  
  
 0.700
PAE3677
Carbonic anhydrase part 2, authentic frameshift; Central intermediary metabolism; Other.
       0.668
PAE1568
NADH-ubiquinone oxidoreductase subunit; Energy metabolism; Electron transport.
  
  
 0.469
PAE1265
Molybdopterin oxidoreductase, molybdopterin binding subunit; Energy metabolism; Electron transport.
  
    0.446
PAE2002
Molybdopterin oxidoreductase; Energy metabolism; Electron transport.
  
    0.446
PAE2662
Formate dehydrogenase alpha subunit; Energy metabolism; Electron transport.
  
    0.446
PAE2859
Molybdopterin oxidoreductase, molybdopterin binding subunit; Energy metabolism; Electron transport.
  
    0.446
PAE3679
Protease IV, conjectural; Protein fate; Degradation of proteins, peptides, and glycopeptides.
       0.443
PAE2839
Molybdopterin oxidoreductase, molybdopterin binding subunit part 2, authentic frameshift; Energy metabolism; Electron transport.
  
    0.429
PAE2840
Molybdopterin oxidoreductase, molybdopterin binding subunit part 1, authentic frameshift; Energy metabolism; Electron transport.
  
    0.429
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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