Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAE3683Hypothetical protein. (280 aa)    
Predicted Functional Partners:
PAE3513
Resolvase, conjectural; DNA metabolism; DNA replication, recombination, and repair.
   
    0.682
PAE0294
P. aerophilum family 322 protein.
   
    0.626
PAE1433
P. aerophilum family 322 protein part 1, authentic frameshift.
   
    0.626
PAE1434
P. aerophilum family 322 protein part 2, authentic frameshift.
   
    0.626
PAE1905
P. aerophilum family 322 protein part 2, authentic frameshift.
   
    0.626
PAE1906
P. aerophilum family 322 protein part 1, authentic frameshift.
   
    0.626
PAE3680
Conserved hypothetical protein; Belongs to the UPF0282 family.
       0.598
PAE3682
Hypothetical protein.
       0.598
PAE3684
Conserved hypothetical protein.
       0.568
PAE3679
Protease IV, conjectural; Protein fate; Degradation of proteins, peptides, and glycopeptides.
       0.557
Your Current Organism:
Pyrobaculum aerophilum
NCBI taxonomy Id: 178306
Other names: P. aerophilum str. IM2, Pyrobaculum aerophilum IM2, Pyrobaculum aerophilum str. IM2, Pyrobaculum aerophilum strain IM2
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