STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_01200Unannotated protein. (254 aa)    
Predicted Functional Partners:
GCA_001647275_01197
Unannotated protein.
 
  
 0.962
GCA_001647275_01183
Unannotated protein.
 
     0.796
GCA_001647275_01185
Unannotated protein.
  
     0.773
GCA_001647275_01201
Unannotated protein.
     
 0.768
GCA_001647275_01321
Unannotated protein.
  
     0.748
GCA_001647275_02867
Unannotated protein.
  
     0.743
GCA_001647275_01181
Unannotated protein.
  
     0.733
GCA_001647275_01187
Unannotated protein.
 
     0.725
GCA_001647275_01202
Unannotated protein.
     
 0.725
GCA_001647275_01787
Unannotated protein.
  
     0.716
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.