STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_01697Unannotated protein. (496 aa)    
Predicted Functional Partners:
GCA_001647275_00877
Unannotated protein.
  
  
 
0.924
GCA_001647275_04411
Unannotated protein.
   
 0.821
GCA_001647275_03220
Unannotated protein.
  
 
 0.781
GCA_001647275_02463
Unannotated protein.
   
  0.692
GCA_001647275_02536
Unannotated protein.
   
  0.692
GCA_001647275_03984
Unannotated protein.
    
  0.676
GCA_001647275_02823
Unannotated protein.
  
  
 0.661
GCA_001647275_00623
Unannotated protein.
   
 
  0.614
GCA_001647275_03321
Unannotated protein.
  
 
 0.580
GCA_001647275_03770
Unannotated protein.
   
 
  0.578
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.