STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_01707Unannotated protein. (282 aa)    
Predicted Functional Partners:
GCA_001647275_01706
Unannotated protein.
   
 0.874
GCA_001647275_04254
Unannotated protein.
    
  0.618
GCA_001647275_01841
Unannotated protein.
  
  
  0.589
GCA_001647275_00325
Unannotated protein.
   
 
 0.528
GCA_001647275_02583
Unannotated protein.
   
 
 0.528
GCA_001647275_02823
Unannotated protein.
  
 
 0.525
GCA_001647275_03953
Unannotated protein.
  
 
  0.517
GCA_001647275_01481
Unannotated protein.
  
     0.500
GCA_001647275_02709
Unannotated protein.
 
   
 0.500
GCA_001647275_00459
Unannotated protein.
    
   0.469
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.