STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_02160Unannotated protein. (358 aa)    
Predicted Functional Partners:
GCA_001647275_00489
Unannotated protein.
 
 0.952
GCA_001647275_04495
Unannotated protein.
  
 
 0.948
GCA_001647275_02161
Unannotated protein.
       0.808
GCA_001647275_02289
Unannotated protein.
 
 
 0.787
GCA_001647275_03893
Unannotated protein.
    
 0.778
GCA_001647275_01522
Unannotated protein.
 
 
 0.689
GCA_001647275_02468
Unannotated protein.
  
 
 0.660
GCA_001647275_01374
Unannotated protein.
  
 
 0.649
GCA_001647275_01084
Unannotated protein.
  
 
 0.615
GCA_001647275_00266
Unannotated protein.
  
 
 0.598
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.