STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_02410Unannotated protein. (234 aa)    
Predicted Functional Partners:
GCA_001647275_02409
Unannotated protein.
 
 
 0.992
GCA_001647275_02408
Unannotated protein.
  
 
 0.910
GCA_001647275_01892
Unannotated protein.
  
 
 0.854
GCA_001647275_01893
Unannotated protein.
  
 
 0.854
GCA_001647275_02407
Unannotated protein.
     
 0.808
GCA_001647275_02411
Unannotated protein.
       0.795
GCA_001647275_02413
Unannotated protein.
 
  
 0.792
GCA_001647275_02406
Unannotated protein.
       0.781
GCA_001647275_00579
Unannotated protein.
  
   
 0.737
GCA_001647275_01370
Unannotated protein.
  
     0.711
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.