STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_03249Unannotated protein. (50 aa)    
Predicted Functional Partners:
GCA_001647275_03250
Unannotated protein.
   
 
 0.954
GCA_001647275_03252
Unannotated protein.
   
 
 0.886
GCA_001647275_00444
Unannotated protein.
  
 
   0.806
GCA_001647275_01377
Unannotated protein.
  
 
   0.805
GCA_001647275_00433
Unannotated protein.
    
   0.781
GCA_001647275_00435
Unannotated protein.
    
   0.781
GCA_001647275_00437
Unannotated protein.
    
   0.781
GCA_001647275_00438
Unannotated protein.
    
   0.781
GCA_001647275_00439
Unannotated protein.
    
   0.781
GCA_001647275_00440
Unannotated protein.
    
   0.781
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.