STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_03748Unannotated protein. (475 aa)    
Predicted Functional Partners:
GCA_001647275_02562
Unannotated protein.
 
 0.990
GCA_001647275_00230
Unannotated protein.
  
 
 0.924
GCA_001647275_00313
Unannotated protein.
     
 0.861
GCA_001647275_00250
Unannotated protein.
   
 
  0.845
GCA_001647275_00726
Unannotated protein.
  
 0.790
GCA_001647275_02279
Unannotated protein.
  
 0.790
GCA_001647275_03749
Unannotated protein.
       0.785
GCA_001647275_00619
Unannotated protein.
  
 
 0.783
GCA_001647275_02249
Unannotated protein.
  
 
 0.783
GCA_001647275_03920
Unannotated protein.
  
 
 0.745
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.