STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_03967Unannotated protein. (502 aa)    
Predicted Functional Partners:
GCA_001647275_02337
Unannotated protein.
  
 
 0.829
GCA_001647275_00525
Unannotated protein.
 
  
  0.647
GCA_001647275_04166
Unannotated protein.
 
     0.594
GCA_001647275_03968
Unannotated protein.
 
     0.579
GCA_001647275_02333
Unannotated protein.
  
 
 0.569
GCA_001647275_02280
Unannotated protein.
  
 
 0.516
GCA_001647275_04329
Unannotated protein.
  
 
 0.516
GCA_001647275_04513
Unannotated protein.
  
 
 0.516
GCA_001647275_03962
Unannotated protein.
  
     0.513
GCA_001647275_04247
Unannotated protein.
  
 
 0.462
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.