STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_04094Unannotated protein. (168 aa)    
Predicted Functional Partners:
GCA_001647275_04095
Unannotated protein.
 
 
   0.928
GCA_001647275_01035
Unannotated protein.
  
     0.767
GCA_001647275_03041
Unannotated protein.
  
     0.749
GCA_001647275_01594
Unannotated protein.
  
     0.747
GCA_001647275_00431
Unannotated protein.
    
 0.565
GCA_001647275_00430
Unannotated protein.
    
 0.557
GCA_001647275_00459
Unannotated protein.
    
 0.524
GCA_001647275_03231
Unannotated protein.
    
 0.524
GCA_001647275_03923
Unannotated protein.
   
 
 0.519
GCA_001647275_04096
Unannotated protein.
  
    0.456
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.