STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001647275_04113Unannotated protein. (468 aa)    
Predicted Functional Partners:
GCA_001647275_04112
Unannotated protein.
 
     0.918
GCA_001647275_04114
Unannotated protein.
 
     0.778
GCA_001647275_04118
Unannotated protein.
 
     0.708
GCA_001647275_03739
Unannotated protein.
  
 
 0.685
GCA_001647275_04119
Unannotated protein.
  
     0.684
GCA_001647275_03310
Unannotated protein.
  
 
 0.673
GCA_001647275_04117
Unannotated protein.
 
   
 0.581
GCA_001647275_03311
Unannotated protein.
  
 
 0.556
GCA_001647275_04116
Unannotated protein.
 
     0.537
GCA_001647275_04120
Unannotated protein.
 
    0.467
Your Current Organism:
Rufibacter ruber
NCBI taxonomy Id: 1783499
Other names: CCM 8646, LMG 29438, LMG:29438, R. ruber, Rufibacter ruber Kyrova et al. 2016, Rufibacter sp. CCM 8646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.