STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_1438Cytochrome o ubiquinol oxidase operon protein cyoD; Scaffold_8_42. (108 aa)    
Predicted Functional Partners:
AWU55_1439
Cytochrome o ubiquinol oxidase subunit III; Scaffold_8_43.
 0.999
AWU55_1440
Cytochrome o ubiquinol oxidase subunit I; Scaffold_8_44; Belongs to the heme-copper respiratory oxidase family.
 0.999
AWU55_1441
Cytochrome o ubiquinol oxidase subunit II; Scaffold_8_45.
 
 0.999
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.998
AWU55_48
Hypothetical protein; Scaffold_0_48.
 
 0.998
AWU55_50
Cytochrome o ubiquinol oxidase subunit III; Scaffold_0_50.
 0.998
AWU55_49
Cytochrome o ubiquinol oxidase subunit I; Scaffold_0_49; Belongs to the heme-copper respiratory oxidase family.
 0.997
AWU55_1577
Succinate dehydrogenase cytochrome b556 subunit; Scaffold_9_98.
   
 
  0.874
AWU55_1580
Succinate dehydrogenase iron-sulfur subunit; Scaffold_9_101.
   
 
 0.857
AWU55_1579
Succinate dehydrogenase flavoprotein subunit; Scaffold_9_100; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.854
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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