STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_1491Aspartate-semialdehyde dehydrogenase; Scaffold_9_12; Belongs to the aldehyde dehydrogenase family. (489 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
   
  0.898
AWU55_2065
Aromatic-amino-acid transaminase; Scaffold_22_50.
    
  0.896
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
   
 
 0.880
AWU55_1055
Aspartate kinase; Scaffold_4_107; Belongs to the aspartokinase family.
   
 
 0.877
AWU55_1492
L-2,4-diaminobutyrate transaminase; Scaffold_9_13; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.876
AWU55_126
Homoserine dehydrogenase; Scaffold_0_126.
    
  0.873
AWU55_2863
Urea carboxylase; Scaffold_85_8.
   
 
 0.780
AWU55_1067
Glutamate synthase (NADPH/NADH) large chain; Scaffold_4_119.
  
 
 0.775
AWU55_1503
4-aminobutyrate aminotransferase; Scaffold_9_24; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  0.773
AWU55_1600
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Scaffold_9_121; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  0.773
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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