STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_1780Type IV fimbrial bioproteinis protein FimT; Scaffold_12_51. (150 aa)    
Predicted Functional Partners:
AWU55_1779
Type IV pilus assembly protein PilE; Scaffold_12_50.
 
  
 0.981
AWU55_1781
Type IV pilus assembly protein PilV; Scaffold_12_52.
 
  
 0.964
AWU55_1786
Type IV pilus assembly protein PilW; Scaffold_12_57.
 
  
 0.953
AWU55_1787
Putative transmembrane Tfp pilus assembly protein PilX (pilX); Scaffold_12_58.
 
  
 0.909
AWU55_1788
Type IV pilus assembly protein PilE; Scaffold_12_59.
 
  
 0.907
AWU55_1782
Uncharacterized protein; Scaffold_12_53.
  
 
 0.853
AWU55_1783
Hypothetical protein; Scaffold_12_54.
  
  
 0.785
AWU55_1784
Type IV fimbrial bioproteinis protein FimT; Scaffold_12_55.
 
     0.782
AWU55_1785
Type IV pilus assembly protein PilV; Scaffold_12_56.
 
  
 0.773
AWU55_1073
Type IV pilus assembly protein PilN; Scaffold_4_125.
 
  
 0.732
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.