STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_1879C4-dicarboxylate-binding protein DctP; Scaffold_18_15. (332 aa)    
Predicted Functional Partners:
AWU55_1878
C4-dicarboxylate transporter, DctQ subunit; Scaffold_18_14.
 
 
  0.985
AWU55_1877
C4-dicarboxylate transporter, DctM subunit; Scaffold_18_13.
 
  0.964
AWU55_2103
Hypothetical protein; Scaffold_25_24.
 
 
  0.860
AWU55_2021
TRAP transporter large transmembrane protein; Scaffold_22_6.
 
 
  0.839
AWU55_2778
TRAP transporter DctM subunit; Scaffold_66_42.
 
 
  0.810
AWU55_2785
TRAP transporter large transmembrane protein; Scaffold_66_49.
 
 
  0.676
AWU55_2628
Putative TRAP-type C4-dicarboxylate transport system, large permease component DctM; Scaffold_46_13.
 
 
  0.636
AWU55_2400
Tripartite ATP-independent periplasmic transporter DctQ; Scaffold_33_48.
  
 
  0.631
AWU55_13
Tripartite ATP-independent periplasmic transporter DctQ; Scaffold_0_13.
   
 
  0.629
AWU55_1941
Tripartite ATP-independent periplasmic transporter DctQ; Scaffold_19_21.
   
 
  0.629
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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