AWU55_2032 protein (Halomonadaceae bacterium T822)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AWU55_2032

Amino acid ABC transporter permease; Scaffold_22_17. (234 aa)

Predicted Functional Partners:

AWU55_1711

0.987

AWU55_2203

0.967

AWU55_2053

0.963

AWU55_2033

0.962

AWU55_2206

0.961

AWU55_2031

0.960

AWU55_2205

0.936

AWU55_2030

0.907

AWU55_1709

0.848

AWU55_2056

0.848

Your Current Organism:

Halomonadaceae bacterium T822

NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AWU55_1709	AWU55_1711	ABC transporter-like protein; Scaffold_11_83.	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	0.989
AWU55_1709	AWU55_2031	ABC transporter-like protein; Scaffold_11_83.	Extracellular solute-binding protein; Scaffold_22_16; Belongs to the bacterial solute-binding protein 3 family.	0.933
AWU55_1709	AWU55_2032	ABC transporter-like protein; Scaffold_11_83.	Amino acid ABC transporter permease; Scaffold_22_17.	0.848
AWU55_1709	AWU55_2033	ABC transporter-like protein; Scaffold_11_83.	Amino acid ABC transporter permease; Scaffold_22_18.	0.851
AWU55_1709	AWU55_2053	ABC transporter-like protein; Scaffold_11_83.	Hypothetical protein; Scaffold_22_38.	0.934
AWU55_1709	AWU55_2205	ABC transporter-like protein; Scaffold_11_83.	Arginine/ornithine transport system permease protein; Scaffold_28_25.	0.951
AWU55_1709	AWU55_2206	ABC transporter-like protein; Scaffold_11_83.	Arginine/ornithine transport system substrate-binding protein; Scaffold_28_26; Belongs to the bacterial solute-binding protein 3 family.	0.933
AWU55_1711	AWU55_1709	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter-like protein; Scaffold_11_83.	0.989
AWU55_1711	AWU55_2030	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter-like protein; Scaffold_22_15.	0.871
AWU55_1711	AWU55_2032	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter permease; Scaffold_22_17.	0.987
AWU55_1711	AWU55_2033	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter permease; Scaffold_22_18.	0.987
AWU55_1711	AWU55_2053	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	Hypothetical protein; Scaffold_22_38.	0.927
AWU55_1711	AWU55_2056	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter ATP-binding protein; Scaffold_22_41.	0.934
AWU55_1711	AWU55_2203	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	Arginine/ornithine transport system ATP-binding protein; Scaffold_28_23.	0.903
AWU55_1711	AWU55_2205	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	Arginine/ornithine transport system permease protein; Scaffold_28_25.	0.990
AWU55_2030	AWU55_1711	ABC transporter-like protein; Scaffold_22_15.	Glutamine transport system substrate-binding protein; Scaffold_11_85; Belongs to the bacterial solute-binding protein 3 family.	0.871
AWU55_2030	AWU55_2031	ABC transporter-like protein; Scaffold_22_15.	Extracellular solute-binding protein; Scaffold_22_16; Belongs to the bacterial solute-binding protein 3 family.	0.958
AWU55_2030	AWU55_2032	ABC transporter-like protein; Scaffold_22_15.	Amino acid ABC transporter permease; Scaffold_22_17.	0.907
AWU55_2030	AWU55_2033	ABC transporter-like protein; Scaffold_22_15.	Amino acid ABC transporter permease; Scaffold_22_18.	0.921
AWU55_2030	AWU55_2053	ABC transporter-like protein; Scaffold_22_15.	Hypothetical protein; Scaffold_22_38.	0.879