STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_2143Outer membrane lipoprotein SlyB; Scaffold_27_18. (157 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.860
AWU55_891
OmpA-like transmembrane region; Scaffold_3_100.
  
  
 0.713
AWU55_2674
Hypothetical protein; Scaffold_47_15.
  
    0.694
AWU55_696
Hypothetical protein; Scaffold_2_108.
  
     0.548
AWU55_2675
Hypothetical protein; Scaffold_47_16.
  
    0.539
ihfA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.510
AWU55_493
SH3 domain protein; Scaffold_1_124.
  
     0.504
AWU55_2144
Isocitrate lyase; Scaffold_27_19.
       0.466
AWU55_308
AsmA protein; Scaffold_0_308.
  
    0.453
flhC
Transcriptional regulator; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family.
  
     0.441
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.