STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_2146Hypothetical protein; Scaffold_27_21. (401 aa)    
Predicted Functional Partners:
rplP
Large subunit ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
   0.963
AWU55_2145
Hypothetical protein; Scaffold_27_20.
       0.827
AWU55_2147
Adenylosuccinate lyase; Scaffold_27_22; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.615
hflD
High frequency lysogenization protein; Scaffold_27_23.
 
  
 0.607
mnmA
tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.590
AWU55_2151
23S rRNA pseudouridine2457 synthase; Scaffold_27_26; Belongs to the pseudouridine synthase RsuA family.
 
    0.521
AWU55_1421
Hypothetical protein; Scaffold_8_25.
 
     0.501
nudJ
NUDIX hydrolase; Scaffold_27_25; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
     0.471
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
     0.449
argS
arginyl-tRNA synthetase; Scaffold_0_34.
   
    0.437
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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