STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (223 aa)    
Predicted Functional Partners:
AWU55_484
Ribulose-phosphate 3-epimerase; Scaffold_1_115; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.946
AWU55_1897
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 0.937
AWU55_2916
Gluconokinase; Scaffold_113_6.
    
 0.923
AWU55_673
Ribokinase; Scaffold_2_85.
   
 0.915
AWU55_1937
6-phosphogluconate dehydrogenase; Scaffold_19_17.
 
  
 0.911
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.886
AWU55_105
Phosphomannomutase / phosphoglucomutase; Scaffold_0_105.
     
 0.883
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.815
AWU55_1457
Glyceraldehyde 3-phosphate dehydrogenase; Scaffold_8_61; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.726
AWU55_209
Glyceraldehyde 3-phosphate dehydrogenase; Scaffold_0_209; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.726
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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