STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_2635LysR family transcriptional regulator; Scaffold_46_20; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
AWU55_520
LysR family transcriptional regulator; Scaffold_1_151; Belongs to the LysR transcriptional regulatory family.
  
     0.771
AWU55_1970
LysR family transcriptional regulator; Scaffold_19_50; Belongs to the LysR transcriptional regulatory family.
  
     0.770
AWU55_2606
LysR family transcriptional regulator; Scaffold_43_33; Belongs to the LysR transcriptional regulatory family.
  
     0.764
AWU55_22
Uncharacterized protein; Scaffold_0_22; Belongs to the LysR transcriptional regulatory family.
  
     0.743
AWU55_1964
HTH-type transcriptional regulator benR (Ben and cat operon transcriptional regulator); Scaffold_19_44; Belongs to the LysR transcriptional regulatory family.
  
     0.736
AWU55_2636
Hypothetical protein; Scaffold_46_21; Belongs to the UPF0324 family.
 
     0.673
AWU55_701
LysR family transcriptional regulator; Scaffold_2_113; Belongs to the LysR transcriptional regulatory family.
  
     0.671
AWU55_2192
LysR family transcriptional regulator; Scaffold_28_12; Belongs to the LysR transcriptional regulatory family.
  
     0.599
AWU55_2633
Altronate hydrolase; Scaffold_46_18.
       0.432
AWU55_2634
Altronate hydrolase; Scaffold_46_19.
       0.432
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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