STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWU55_412Uncharacterized protein; Scaffold_1_43. (323 aa)    
Predicted Functional Partners:
AWU55_413
sigma-E factor negative regulatory protein RseA; Scaffold_1_44.
 
 
 0.999
AWU55_414
RNA polymerase sigma-70 factor, ECF subfamily; Scaffold_1_45; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.883
AWU55_411
Peptidase S1C, Do; Scaffold_1_42; Belongs to the peptidase S1C family.
  
  
 0.556
AWU55_766
Methyltransferase type 11; Scaffold_2_178.
  
     0.542
AWU55_2366
uroporphyrin-III C-methyltransferase; Scaffold_33_14.
  
     0.526
recO
Hypothetical protein; Involved in DNA repair and RecF pathway recombination.
 
    0.507
AWU55_940
Hypothetical protein; Scaffold_3_149.
  
    0.495
AWU55_787
RNA polymerase sigma-70 factor, ECF subfamily; Scaffold_2_199; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.483
AWU55_2677
Sulfatase; Scaffold_47_18.
  
     0.434
AWU55_564
LysR family transcriptional regulator, cys regulon transcriptional activator; Scaffold_1_195; Belongs to the LysR transcriptional regulatory family.
  
     0.420
Your Current Organism:
Halomonadaceae bacterium T822
NCBI taxonomy Id: 1783518
Other names: H. bacterium T82-2, Halomonadaceae bacterium T82-2
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